CICERelative Class Reference

#include <CInformationCalculator.h>

Inheritance diagram for CICERelative:

List of all members.

Public Member Functions
	CICERelative (double inThreshold=1.0)
	CICERelative (const CICERelative &in)
void	setThreshold (double inThreshold)
virtual bool	isOnePass () const
virtual void	startFirstPass ()
virtual void	adjustInnerState (double)
virtual double	operator() (double) const
	really applying this function
virtual CInformationCalculator *	subClone () const
Private Attributes
double	mSum
double	mThreshold

---

Detailed Description

Definition at line 83 of file CInformationCalculator.h.

---

Constructor & Destructor Documentation

CICERelative::CICERelative

(

double

inThreshold = 1.0

)

Definition at line 114 of file CInformationCalculator.cc.

References setThreshold().

Referenced by subClone().

                                            {
  setThreshold(inThreshold);
}

CICERelative::CICERelative

(

const CICERelative &

in

)

Definition at line 118 of file CInformationCalculator.cc.

References mSum, and mThreshold.

                                                {
  mThreshold = in.mThreshold;
  mSum = in.mSum;
}

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Member Function Documentation

void CICERelative::setThreshold

(

double

inThreshold

)

Definition at line 123 of file CInformationCalculator.cc.

References mThreshold.

Referenced by CICERelative().

                                                 {
  mThreshold=inThreshold;
};

bool CICERelative::isOnePass

(

)

const [virtual]

Reimplemented from CInformationCalculator.

Definition at line 128 of file CInformationCalculator.cc.

                                 {
  return false;
};

void CICERelative::startFirstPass

(

)

[virtual]

Reimplemented from CInformationCalculator.

Definition at line 132 of file CInformationCalculator.cc.

References mSum.

                                 {
  mSum=0;
};

void CICERelative::adjustInnerState

(

double

inValue

)

[virtual]

Reimplemented from CInformationCalculator.

Definition at line 136 of file CInformationCalculator.cc.

References mSum.

                                                 {
  mSum+=inValue;
};

double CICERelative::operator()

(

double

)

const [virtual]

really applying this function

Implements CInformationCalculator.

Definition at line 140 of file CInformationCalculator.cc.

References mSum, and mThreshold.

                                                        {
  /*  if((inProbability
      >
      mThreshold) 
      && 
      (mSum>0))
      cout << "+";
    else
  cout << "-";*/

  return 
    ((inProbability
      >
      mThreshold) 
     && 
     (mSum>0))
    ? -log(inProbability/mSum)*(inProbability/mSum)
    : 0;
}

CInformationCalculator * CICERelative::subClone

(

)

const [virtual]

Implements CInformationCalculator.

Definition at line 160 of file CInformationCalculator.cc.

References CICERelative().

                                                   {
  return new CICERelative(*this);
}

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Member Data Documentation

double CICERelative::mSum [private]

Definition at line 85 of file CInformationCalculator.h.

Referenced by adjustInnerState(), CICERelative(), operator()(), and startFirstPass().

double CICERelative::mThreshold [private]

Definition at line 87 of file CInformationCalculator.h.

Referenced by CICERelative(), operator()(), and setThreshold().

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The documentation for this class was generated from the following files:

• gift/libGIFTAcDistanceMatrix/include/CInformationCalculator.h
• gift/libGIFTAcDistanceMatrix/cc/CInformationCalculator.cc